Workshop Agenda

NEW COMMUNICATION CHANNELS FOR BIOLOGY

THURSDAY 26th June 2008

7:45 AM Shuttle service pickup from Residence Inn Marriott - La Jolla to Atkinson Hall
(Meet at Main Lobby)

8:00 AM Breakfast

8:45 AM Opening Remarks
Srikrishna Subramanian (Burnham Institute for Medical Research)

9:00 AM - 10:45 AM SESSION I - Scientific Discovery and Dissemination

Chair: George Garrity (Michigan State University)

9:00 AM - 9:35 AM Aravind L. Iyer (Computational Biology Branch, NCBI, NLM, NIH)
Apprehending Life's complexity: Making and communicating biological discoveries

9:35 AM - 10:10 AM Hilary Spencer (Nature Publishing Group)
Nature Precedings and the Flow of Scientific Research

10:10 AM - 10:45 AM Moshe Pritsker (CEO, Journal of Visual Experiments)
Video-Publication for Biological Research: why and how to do it

10:45 AM - 11:00 AM BREAK

11:00 AM - 12:10 PM SESSION II - Data Sharing & Reuse

Chair: Jean-Claude Bradley (Drexel University)

11:00 AM - 11:35 AM Dan Gezelter (University of Notre Dame)
From Open Source to Open Science

11:35 AM - 12:10 PM Aaron Fulkerson (CEO, MindTouch)
Collaborative Technologies and Best Practices

12:10 PM - 12:30 PM Larry Smarr
Calit2 Technology Overview

12:30 PM - 1:30 PM Lunch

1:30 PM - 2:00 PM Jen Dodd
SciBarCamp Introduction - Informal sessions

2:00 PM - 4:30 PM SciBarCamp, Networking,  Demos & "InfoPosters" Session

2:00 PM - 4:00 PM
Calit2 VIZ demo (CAVE, Varrier, Tiled wall/hyperdisplays, etc)

4:00 PM - 4:30 PM Coffee Break

4:30 PM - 6:15 PM SESSION III  Web 2.0 Applications & Impact on Biology

Chair: Gerard Manning (Salk Institute for Biological Studies)


4:30 PM - 5:05 PM Michael Gribskov (Purdue University)

EcoliHub

5:05 PM - 5:40 PM Alexander Pico (The Gladstone Institutes, San Francisco)
"WikiPathways: An Experiment in the Community-based Curation of Biology"

5:40 PM - 6:15 PM Sheldon McKay (Cold Spring Harbor Laboratory)
modENCODE & Wormbase - Wikis for Genome Biology

6:15 PM Dinner

Dinner Keynote
7:15 PM - 8:00 PM Michael Nielsen (Perimeter Institute for Theoretical Physics, Ontario, Canada)

Future of Science.

 

8:15 PM Shuttle service pickup from Atkinson Hall to residence Inn - La Jolla (Meet at drop-off location)

FRIDAY 27th June 2008


7:45 AM Shuttle service pickup from Residence Inn Marriott - La Jolla to Atkinson Hall
(Meet at Main Lobby)

8:00 AM Breakfast

8:30 AM - 11:00 AM SESSION IV Building & Sustaining a Community

Chair: Jim Paulson (The Scripps Research Institute)

8:30 AM - 9.00 AM Chris Day (University of Wisconsin)
Citizendium and Community-driven Knowledge Efforts

9:00 AM - 9.25 AM Paul Gilna (University of California, San Diego)
A Community-driven Cyber Infrastructure for Metagenomics

9:25 AM - 9:50 AM Chris Condayan (American Society for Microbiology)
Communicating Science to the Public with New Media

 

9:50 AM - 10:10 AM BREAK

 (Session continues after break)

10:10 AM - 10:35 AM George Garrity (Michigan State University)
Toward a Standards-Compliant Genomic and Metagenomic Publication Record

10:35 AM - 11:00 AM Phil Bourne (University of California, San Diego)
SciVee: Taking scientific communication into the 21st century


11:00 AM - 11:15 AM Breakout groups Assignments and Instructions  John Wooley  Calit2 Auditorium

11:15 AM Breakout groups to discuss questions Breakout rooms

12:30 PM - 1:30 PM Lunch

1:30 PM Breakout Group Assignments and Instructions (cont.)

1:45 PM Formulation of Recommendations

2:45 PM - 3:00 PM BREAK

3:00 PM Presentation of Recommendations & Discussion  Calit2 Auditorium

4:00 PM Closing Comments (John Wooley)

4:15 PM Shuttle service pickup from Atkinson Hall to residence Inn - La Jolla (Meet at drop-off location)

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